Using the UMLS Semantic Network to Validate NCI Thesaurus Structure and Analyze its Alignment with the OBO Relations Ontology

نویسندگان

  • Sherri de Coronado
  • Mark S. Tuttle
  • Harold R. Solbrig
چکیده

NCI Thesaurus entries reference corresponding nodes in the UMLS Semantic Network (SN). Adapting a process previously used to refine relationship definitions in the UMLS Metathesaurus, we used these Thesaurus-to-Network references to analyze alignment of the Thesaurus with the OBO Relations Ontology and at the same time validate and improve Thesaurus structure. Given this experience, we offer suggestions for enhancement of the UMLS SN so that it can be even more useful in the future.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

طرح نقشه نمایی مفاهیم طبّ سنّتی ایران در ساختار ابراصطلاحنامه و شبکه معنایی«(UMLS) نظام زبان واحد پزشکی »

Introduction: This research was aimed to analyze mapping scheme of Traditional Iranian Medicine (TIM) with structure of common language of meta- thesaurus and Semantic network Unified Medical System Language (UMLS). The domain, location and relation of TIM in the UMLS is designed, and recitation of location and proportion of the TIM’s concepts are provided. Methods: This is a triphasic research...

متن کامل

Auditing the NCI Thesaurus with Semantic Web Technologies

Auditing biomedical terminologies often results in the identification of inconsistencies and thus helps to improve their quality. In this paper, we present a method based on Semantic Web technologies for auditing biomedical terminologies and apply it to the NCI thesaurus. We stored the NCI thesaurus concepts and their properties in an RDF triple store. By querying this store, we assessed the co...

متن کامل

Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies

Objective: The objective of this study is to compare two large biomedical terminologies, SNOMED CT and the National Cancer Institute (NCI) Thesaurus, through Semantic Web technologies. Methods: The two terminologies are converted into the Resource Description Framework (RDF) and loaded into a common triple store. The Unified Medical Language System (UMLS) is used to identify correspondences bet...

متن کامل

Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups

OBJECTIVE The objective of this study is to develop an approach to evaluate the quality of terminological annotations on the value set (ie, enumerated value domain) components of the common data elements (CDEs) in the context of clinical research using both unified medical language system (UMLS) semantic types and groups. MATERIALS AND METHODS The CDEs of the National Cancer Institute (NCI) C...

متن کامل

Experience in Aligning Anatomical Ontologies

An ontology is a formal representation of a domain modeling the entities in the domain and their relations. When a domain is represented by multiple ontologies, there is need for creating mappings among these ontologies in order to facilitate the integration of data annotated with these ontologies and reasoning across ontologies. The objective of this paper is to recapitulate our experience in ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • AMIA ... Annual Symposium proceedings. AMIA Symposium

دوره   شماره 

صفحات  -

تاریخ انتشار 2007